INFO [698658] ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! INFO [698658] Package versions INFO [698658] ---------------- INFO [698658] ESMValCore: 2.8.0 INFO [698658] ESMValTool: 2.8.0 INFO [698658] ---------------- INFO [698658] Using config file /nird/home/adagj/.esmvaltool/config-user.yml INFO [698658] Writing program log files to: /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/main_log.txt /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/main_log_debug.txt INFO [698658] Using default ESGF configuration, configuration file /nird/home/adagj/.esmvaltool/esgf-pyclient.yml not present. WARNING [698658] ESGF credentials missing, only data that is accessible without logging in will be available. See https://esgf.github.io/esgf-user-support/user_guide.html for instructions on how to create an account if you do not have one yet. Next, configure your system so esmvaltool can use your credentials. This can be done using the keyring package, or you can just enter them in /nird/home/adagj/.esmvaltool/esgf-pyclient.yml. keyring ======= First install the keyring package (requires a supported backend, see https://pypi.org/project/keyring/): $ pip install keyring Next, set your username and password by running the commands: $ keyring set ESGF hostname $ keyring set ESGF username $ keyring set ESGF password To check that you entered your credentials correctly, run: $ keyring get ESGF hostname $ keyring get ESGF username $ keyring get ESGF password configuration file ================== You can store the hostname, username, and password or your OpenID account in a plain text in the file /nird/home/adagj/.esmvaltool/esgf-pyclient.yml like this: logon: hostname: "your-hostname" username: "your-username" password: "your-password" or your can configure an interactive log in: logon: interactive: true Note that storing your password in plain text in the configuration file is less secure. On shared systems, make sure the permissions of the file are set so only you can read it, i.e. $ ls -l /nird/home/adagj/.esmvaltool/esgf-pyclient.yml shows permissions -rw-------. INFO [698658] Starting the Earth System Model Evaluation Tool at time: 2023-05-31 11:31:56 UTC INFO [698658] ---------------------------------------------------------------------- INFO [698658] RECIPE = /nird/home/adagj/esmvaltool_workshop/recipe_cbf.yml INFO [698658] RUNDIR = /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run INFO [698658] WORKDIR = /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/work INFO [698658] PREPROCDIR = /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/preproc INFO [698658] PLOTDIR = /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/plots INFO [698658] ---------------------------------------------------------------------- INFO [698658] Running tasks using at most 2 processes INFO [698658] If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. INFO [698658] If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. INFO [698658] Creating tasks from recipe INFO [698658] Creating tasks for diagnostic map INFO [698658] Creating diagnostic task map/script1 INFO [698658] Creating preprocessor task map/psl INFO [698658] Creating preprocessor 'prepare_map' task for variable 'psl' WARNING [698658] 'CMIP6' rootpaths '/scratch/adagj/ESGF/CMIP6' set in config-user.yml do not exist INFO [698658] Found input files for Dataset: psl, Amon, CMIP6, NorESM2-LM, CMIP, historical, r1i1p1f1, gn, v20190815 INFO [698658] Found input files for Dataset: psl, Amon, CMIP6, NorESM2-LM, CMIP, historical, r2i1p1f1, gn, v20190920 INFO [698658] Found input files for Dataset: psl, Amon, CMIP6, NorESM2-LM, CMIP, historical, r3i1p1f1, gn, v20190920 INFO [698658] Found input files for Dataset: psl, Amon, CMIP6, NorESM2-MM, CMIP, historical, r1i1p1f1, gn, v20191108 WARNING [698658] 'OBS6' rootpaths '/scratch/adagj/ESGF/obsdata' set in config-user.yml do not exist INFO [698658] Found input files for Dataset: psl, Amon, OBS6, ERA-20C, 1 INFO [698658] PreprocessingTask map/psl created. INFO [698658] These tasks will be executed: map/psl, map/script1 INFO [698658] Wrote recipe with version numbers and wildcards to: file:///projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/recipe_cbf_filled.yml INFO [698658] Running 2 tasks using 2 processes INFO [698799] Starting task map/psl in process [698799] INFO [698658] Progress: 1 tasks running, 1 tasks waiting for ancestors, 0/2 done WARNING [698799] There were warnings in variable psl: Added guessed bounds to coordinate lon from var lon Added guessed bounds to coordinate lat from var lat Added guessed bounds to coordinate time from var psl loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier3/ERA-20C/OBS6_ERA-20C_reanaly_1_Amon_psl_190001-201012.nc INFO [698799] Successfully completed task map/psl (priority 1) in 0:00:49.205666 INFO [698658] Progress: 0 tasks running, 1 tasks waiting for ancestors, 1/2 done INFO [698800] Starting task map/script1 in process [698800] INFO [698800] Running command ['/diagnostics/esmvaltool/2.8.0/bin/python', '/nird/home/adagj/esmvaltool_workshop/diag_cbfs.py', '/projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/map/script1/settings.yml'] INFO [698800] Writing output to /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/work/map/script1 INFO [698800] Writing plots to /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/plots/map/script1 INFO [698800] Writing log to /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/map/script1/log.txt INFO [698800] To re-run this diagnostic script, run: cd /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/map/script1; MPLBACKEND="Agg" /diagnostics/esmvaltool/2.8.0/bin/python /nird/home/adagj/esmvaltool_workshop/diag_cbfs.py /projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/map/script1/settings.yml INFO [698658] Progress: 1 tasks running, 0 tasks waiting for ancestors, 1/2 done INFO [698800] Maximum memory used (estimate): 1.1 GB INFO [698800] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. WARNING [698800] The reference file /diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/references/NICEST.bibtex does not exist, citation information incomplete. WARNING [698800] The reference file /diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/references/2.bibtex does not exist, citation information incomplete. INFO [698800] Successfully completed task map/script1 (priority 0) in 0:00:22.920737 INFO [698658] Progress: 0 tasks running, 0 tasks waiting for ancestors, 2/2 done INFO [698658] Successfully completed all tasks. INFO [698658] Wrote recipe with version numbers and wildcards to: file:///projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/run/recipe_cbf_filled.yml INFO [698658] Wrote recipe output to: file:///projects/NS9560K/www/diagnostics/esmvaltool/adagj/tmp/recipe_cbf_20230531_113155/index.html INFO [698658] Ending the Earth System Model Evaluation Tool at time: 2023-05-31 11:33:09 UTC INFO [698658] Time for running the recipe was: 0:01:12.522922 INFO [698658] Maximum memory used (estimate): 3.8 GB INFO [698658] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [698658] Run was successful