256 pes participating in computation for CLM ----------------------------------- NODE# NAME ( 0) c1-29 ( 1) c1-29 ( 2) c1-29 ( 3) c1-29 ( 4) c1-29 ( 5) c1-29 ( 6) c1-29 ( 7) c1-29 ( 8) c1-29 ( 9) c1-29 ( 10) c1-29 ( 11) c1-29 ( 12) c1-29 ( 13) c1-29 ( 14) c1-29 ( 15) c1-29 ( 16) c1-29 ( 17) c1-29 ( 18) c1-29 ( 19) c1-29 ( 20) c1-29 ( 21) c1-29 ( 22) c1-29 ( 23) c1-29 ( 24) c1-29 ( 25) c1-29 ( 26) c1-29 ( 27) c1-29 ( 28) c1-29 ( 29) c1-29 ( 30) c1-29 ( 31) c1-29 ( 32) c1-29 ( 33) c1-29 ( 34) c1-29 ( 35) c1-29 ( 36) c1-29 ( 37) c1-29 ( 38) c1-29 ( 39) c1-29 ( 40) c1-29 ( 41) c1-29 ( 42) c1-29 ( 43) c1-29 ( 44) c1-29 ( 45) c1-29 ( 46) c1-29 ( 47) c1-29 ( 48) c1-29 ( 49) c1-29 ( 50) c1-29 ( 51) c1-29 ( 52) c1-29 ( 53) c1-29 ( 54) c1-29 ( 55) c1-29 ( 56) c1-29 ( 57) c1-29 ( 58) c1-29 ( 59) c1-29 ( 60) c1-29 ( 61) c1-29 ( 62) c1-29 ( 63) c1-29 ( 64) c1-29 ( 65) c1-29 ( 66) c1-29 ( 67) c1-29 ( 68) c1-29 ( 69) c1-29 ( 70) c1-29 ( 71) c1-29 ( 72) c1-29 ( 73) c1-29 ( 74) c1-29 ( 75) c1-29 ( 76) c1-29 ( 77) c1-29 ( 78) c1-29 ( 79) c1-29 ( 80) c1-29 ( 81) c1-29 ( 82) c1-29 ( 83) c1-29 ( 84) c1-29 ( 85) c1-29 ( 86) c1-29 ( 87) c1-29 ( 88) c1-29 ( 89) c1-29 ( 90) c1-29 ( 91) c1-29 ( 92) c1-29 ( 93) c1-29 ( 94) c1-29 ( 95) c1-29 ( 96) c1-29 ( 97) c1-29 ( 98) c1-29 ( 99) c1-29 ( 100) c1-29 ( 101) c1-29 ( 102) c1-29 ( 103) c1-29 ( 104) c1-29 ( 105) c1-29 ( 106) c1-29 ( 107) c1-29 ( 108) c1-29 ( 109) c1-29 ( 110) c1-29 ( 111) c1-29 ( 112) c1-29 ( 113) c1-29 ( 114) c1-29 ( 115) c1-29 ( 116) c1-29 ( 117) c1-29 ( 118) c1-29 ( 119) c1-29 ( 120) c1-29 ( 121) c1-29 ( 122) c1-29 ( 123) c1-29 ( 124) c1-29 ( 125) c1-29 ( 126) c1-29 ( 127) c1-29 ( 128) c1-29 ( 129) c1-29 ( 130) c1-29 ( 131) c1-29 ( 132) c1-29 ( 133) c1-29 ( 134) c1-29 ( 135) c1-29 ( 136) c1-29 ( 137) c1-29 ( 138) c1-29 ( 139) c1-29 ( 140) c1-29 ( 141) c1-29 ( 142) c1-29 ( 143) c1-29 ( 144) c1-29 ( 145) c1-29 ( 146) c1-29 ( 147) c1-29 ( 148) c1-29 ( 149) c1-29 ( 150) c1-29 ( 151) c1-29 ( 152) c1-29 ( 153) c1-29 ( 154) c1-29 ( 155) c1-29 ( 156) c1-29 ( 157) c1-29 ( 158) c1-29 ( 159) c1-29 ( 160) c1-29 ( 161) c1-29 ( 162) c1-29 ( 163) c1-29 ( 164) c1-29 ( 165) c1-29 ( 166) c1-29 ( 167) c1-29 ( 168) c1-29 ( 169) c1-29 ( 170) c1-29 ( 171) c1-29 ( 172) c1-29 ( 173) c1-29 ( 174) c1-29 ( 175) c1-29 ( 176) c1-29 ( 177) c1-29 ( 178) c1-29 ( 179) c1-29 ( 180) c1-29 ( 181) c1-29 ( 182) c1-29 ( 183) c1-29 ( 184) c1-29 ( 185) c1-29 ( 186) c1-29 ( 187) c1-29 ( 188) c1-29 ( 189) c1-29 ( 190) c1-29 ( 191) c1-29 ( 192) c1-29 ( 193) c1-29 ( 194) c1-29 ( 195) c1-29 ( 196) c1-29 ( 197) c1-29 ( 198) c1-29 ( 199) c1-29 ( 200) c1-29 ( 201) c1-29 ( 202) c1-29 ( 203) c1-29 ( 204) c1-29 ( 205) c1-29 ( 206) c1-29 ( 207) c1-29 ( 208) c1-29 ( 209) c1-29 ( 210) c1-29 ( 211) c1-29 ( 212) c1-29 ( 213) c1-29 ( 214) c1-29 ( 215) c1-29 ( 216) c1-29 ( 217) c1-29 ( 218) c1-29 ( 219) c1-29 ( 220) c1-29 ( 221) c1-29 ( 222) c1-29 ( 223) c1-29 ( 224) c1-29 ( 225) c1-29 ( 226) c1-29 ( 227) c1-29 ( 228) c1-29 ( 229) c1-29 ( 230) c1-29 ( 231) c1-29 ( 232) c1-29 ( 233) c1-29 ( 234) c1-29 ( 235) c1-29 ( 236) c1-29 ( 237) c1-29 ( 238) c1-29 ( 239) c1-29 ( 240) c1-29 ( 241) c1-29 ( 242) c1-29 ( 243) c1-29 ( 244) c1-29 ( 245) c1-29 ( 246) c1-29 ( 247) c1-29 ( 248) c1-29 ( 249) c1-29 ( 250) c1-29 ( 251) c1-29 ( 252) c1-29 ( 253) c1-29 ( 254) c1-29 ( 255) c1-29 atm component = datm rof component = srof glc component = sglc atm_prognostic = F rof_prognostic = F glc_present = F flds_scalar_name = cpl_scalars flds_scalar_num = 4 flds_scalar_index_nx = 1 flds_scalar_index_ny = 2 flds_scalar_index_nextsw_cday = 3 flds_co2a= F flds_co2b= F flds_co2c= F sending co2 to atm = F receiving co2 from atm = F (shr_dust_emis_read) Read in dust_emis_inparm namelist from: drv_flds_in (shr_drydep_read) Read in drydep_inparm namelist from: drv_flds_in (shr_drydep_read) No dry deposition fields will be transfered (shr_fire_emis_readnl) Read in fire_emis_readnl namelist from: drv_flds_in (shr_megan_readnl) Read in megan_emis_readnl namelist from: drv_flds_in MEGAN entries: (shr_carma_readnl) Read in carma_inparm namelist from: drv_flds_in shr_carma_readnl: no carma_inparm namelist found in drv_flds_in (shr_ndep_readnl) Read in ndep_inparm namelist from: drv_flds_in LND: PIO numiotasks= 1 LND: PIO stride= 256 LND: PIO rearranger= 2 LND: PIO root= 1 dtime = 1800 (shr_orb_params) ------ Computed Orbital Parameters ------ (shr_orb_params) Eccentricity = 1.676429E-02 (shr_orb_params) Obliquity (deg) = 2.345928E+01 (shr_orb_params) Obliquity (rad) = 4.094416E-01 (shr_orb_params) Long of perh(deg) = 1.003269E+02 (shr_orb_params) Long of perh(rad) = 4.892627E+00 (shr_orb_params) Long at v.e.(rad) = -3.290978E-02 (shr_orb_params) ----------------------------------------- noresm3_0_beta12 Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in rooting_profile settings: rooting_profile_method_water = 1 (rooting_profile_varindex_water = 1 ) rooting_profile_method_carbon = 1 (rooting_profile_varindex_carbon = 2 ) soilwater_movement settings: soilwater_movement_method = 1 upper_boundary_condition = 1 lower_boundary_condition = 2 use_bedrock = F dtmin = 60.0000000000000 verySmall = 1.000000000000000E-008 xTolerUpper = 0.100000000000000 xTolerLower = 1.000000000000000E-002 expensive = 42 inexpensive = 1 flux_calculation = 1 soil_resis settings: soil_resis_method = 1 Read in canopyfluxes_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 canopyfluxes_inparm settings: &CANOPYFLUXES_INPARM USE_UNDERCANOPY_STABILITY = F, USE_BIOMASS_HEAT_STORAGE = F, ITMAX_CANOPY_FLUXES = 40 / Read in clm_CanopyHydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 canopyhydrology settings: use_clm5_fpi = T Read in surfacealbedo_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 surfacealbedo_inparm settings &SURFACEALBEDO_INPARM SNOWVEG_AFFECTS_RADIATION = T / Read in clm_SnowHydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 SnowHydrology settings: &CLM_SNOWHYDROLOGY_INPARM WIND_DEPENDENT_SNOW_DENSITY = T, SNOW_OVERBURDEN_COMPACTION_METHOD = Vionnet2012 , LOTMP_SNOWDENSITY_METHOD = Slater2017 , OVERBURDEN_COMPRESS_TFACTOR = 8.000000000000000E-002, RESET_SNOW = F, RESET_SNOW_GLC = F, RESET_SNOW_GLC_ELA = 1000000000.00000 , SNOW_DZMIN_1 = 1.000000000000000E-002, SNOW_DZMAX_L_1 = 3.000000000000000E-002, SNOW_DZMAX_U_1 = 2.000000000000000E-002, SNOW_DZMIN_2 = 1.500000000000000E-002, SNOW_DZMAX_L_2 = 7.000000000000001E-002, SNOW_DZMAX_U_2 = 5.000000000000000E-002 / Read in clmu_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban explicit air-conditioning adoption rate = T urban traffic flux = F Read in clm_humanindex_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 Read in soilhydrology_inparm namelist (OPNFIL): Successfully opened file lnd_in on unit= 99 soilhydrology_inparm settings: &SOILHYDROLOGY_INPARM BASEFLOW_SCALAR = 1.000000000000000E-003 / Successfully initialized run control settings Attempting to read numcft from the surface data ..... (GETFIL): attempting to find local file surfdata_4x5_hist_1850_16pfts_c251022.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surfdata_4x5_hist_1850_16pfts_c251022.nc Successfully read maxsoil_patches and numcft from the surface data Attempting to read nlevurb from the surface data ..... (GETFIL): attempting to find local file surfdata_4x5_hist_1850_16pfts_c251022.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surfdata_4x5_hist_1850_16pfts_c251022.nc Successfully read nlevurb from the surface data FatesParametersInterface.F90::FatesReadParameters :: CLM reading ED/FATES para meters (GETFIL): attempting to find local file fates_params_sci.1.88.6_api.42.0.0_14pft_nor_sci2_api1_c260130.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/paramdata/fates_params_sci.1.88.6_api.42.0.0_14pft_nor_sci2_api1_c260130.nc ncd_inqvid: variable fates_fire_emission_compound_name is not on dataset clmfates_interfaceMod.F90:: reading fates_leaf_photo_temp_acclim_timescale clmfates_interfaceMod.F90:: reading fates_trs_seedling_emerg_h2o_timescale clmfates_interfaceMod.F90:: reading fates_trs_seedling_mort_par_timescale clmfates_interfaceMod.F90:: reading fates_trs_seedling_mdd_timescale clmfates_interfaceMod.F90:: reading fates_trs_seedling2sap_par_timescale clmfates_interfaceMod.F90:: reading fates_leaf_photo_temp_acclim_thome_time clmfates_interfaceMod.F90:: reading fates_mort_disturb_frac clmfates_interfaceMod.F90:: reading fates_comp_excln clmfates_interfaceMod.F90:: reading fates_vai_top_bin_width clmfates_interfaceMod.F90:: reading fates_vai_width_increase_factor clmfates_interfaceMod.F90:: reading fates_fire_nignitions clmfates_interfaceMod.F90:: reading fates_mort_understorey_death clmfates_interfaceMod.F90:: reading fates_frag_cwd_fcel clmfates_interfaceMod.F90:: reading fates_frag_cwd_flig clmfates_interfaceMod.F90:: reading fates_maintresp_nonleaf_baserate clmfates_interfaceMod.F90:: reading fates_phen_gddthresh_a clmfates_interfaceMod.F90:: reading fates_phen_gddthresh_b clmfates_interfaceMod.F90:: reading fates_phen_gddthresh_c clmfates_interfaceMod.F90:: reading fates_phen_chilltemp clmfates_interfaceMod.F90:: reading fates_phen_mindayson clmfates_interfaceMod.F90:: reading fates_phen_ncolddayslim clmfates_interfaceMod.F90:: reading fates_phen_coldtemp clmfates_interfaceMod.F90:: reading fates_cohort_size_fusion_tol clmfates_interfaceMod.F90:: reading fates_cohort_age_fusion_tol clmfates_interfaceMod.F90:: reading fates_patch_fusion_tol clmfates_interfaceMod.F90:: reading fates_canopy_closure_thresh clmfates_interfaceMod.F90:: reading fates_maxcohort clmfates_interfaceMod.F90:: reading fates_hydro_kmax_rsurf1 clmfates_interfaceMod.F90:: reading fates_hydro_kmax_rsurf2 clmfates_interfaceMod.F90:: reading fates_hydro_psi0 clmfates_interfaceMod.F90:: reading fates_hydro_psicap clmfates_interfaceMod.F90:: reading fates_soil_salinity clmfates_interfaceMod.F90:: reading fates_landuse_logging_dbhmin clmfates_interfaceMod.F90:: reading fates_landuse_logging_dbhmax clmfates_interfaceMod.F90:: reading fates_landuse_logging_collateral_frac clmfates_interfaceMod.F90:: reading fates_landuse_logging_coll_under_frac clmfates_interfaceMod.F90:: reading fates_landuse_logging_direct_frac clmfates_interfaceMod.F90:: reading fates_landuse_logging_mechanical_frac clmfates_interfaceMod.F90:: reading fates_landuse_logging_event_code clmfates_interfaceMod.F90:: reading fates_landuse_logging_dbhmax_infra clmfates_interfaceMod.F90:: reading fates_landuse_logging_export_frac clmfates_interfaceMod.F90:: reading fates_cnp_eca_plant_escalar clmfates_interfaceMod.F90:: reading fates_q10_mr clmfates_interfaceMod.F90:: reading fates_q10_froz clmfates_interfaceMod.F90:: reading fates_dev_arbitrary clmfates_interfaceMod.F90:: reading fates_damage_event_code clmfates_interfaceMod.F90:: reading fates_damage_canopy_layer_code clmfates_interfaceMod.F90:: reading fates_landuse_grazing_carbon_use_eff clmfates_interfaceMod.F90:: reading fates_landuse_grazing_maxheight clmfates_interfaceMod.F90:: reading fates_landuse_grazing_nitrogen_use_eff clmfates_interfaceMod.F90:: reading fates_landuse_grazing_phosphorus_use_eff clmfates_interfaceMod.F90:: reading fates_hydro_htftype_node clmfates_interfaceMod.F90:: reading fates_history_sizeclass_bin_edges clmfates_interfaceMod.F90:: reading fates_history_ageclass_bin_edges clmfates_interfaceMod.F90:: reading fates_history_height_bin_edges clmfates_interfaceMod.F90:: reading fates_fire_active_crown_fire clmfates_interfaceMod.F90:: reading fates_fire_cg_strikes clmfates_interfaceMod.F90:: reading fates_history_coageclass_bin_edges clmfates_interfaceMod.F90:: reading fates_history_damage_bin_edges clmfates_interfaceMod.F90:: reading fates_landuse_crop_lu_pft_vector clmfates_interfaceMod.F90:: reading fates_maxpatches_by_landuse clmfates_interfaceMod.F90:: reading fates_max_nocomp_pfts_by_landuse clmfates_interfaceMod.F90:: reading fates_landuse_grazing_rate clmfates_interfaceMod.F90:: reading fates_fire_fdi_alpha clmfates_interfaceMod.F90:: reading fates_fire_miner_total clmfates_interfaceMod.F90:: reading fates_fire_fuel_energy clmfates_interfaceMod.F90:: reading fates_fire_part_dens clmfates_interfaceMod.F90:: reading fates_fire_miner_damp clmfates_interfaceMod.F90:: reading fates_fire_max_durat clmfates_interfaceMod.F90:: reading fates_fire_durat_slope clmfates_interfaceMod.F90:: reading fates_fire_drying_ratio clmfates_interfaceMod.F90:: reading fates_fire_threshold clmfates_interfaceMod.F90:: reading fates_rxfire_temp_upthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_temp_lwthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_rh_upthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_rh_lwthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_wind_upthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_wind_lwthreshold clmfates_interfaceMod.F90:: reading fates_rxfire_AB clmfates_interfaceMod.F90:: reading fates_rxfire_min_threshold clmfates_interfaceMod.F90:: reading fates_rxfire_max_threshold clmfates_interfaceMod.F90:: reading fates_rxfire_fuel_min clmfates_interfaceMod.F90:: reading fates_rxfire_fuel_max clmfates_interfaceMod.F90:: reading fates_rxfire_min_frac clmfates_interfaceMod.F90:: reading fates_frag_cwd_frac clmfates_interfaceMod.F90:: reading fates_fire_SAV clmfates_interfaceMod.F90:: reading fates_fire_FBD clmfates_interfaceMod.F90:: reading fates_fire_min_moisture clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture clmfates_interfaceMod.F90:: reading fates_fire_low_moisture_Coeff clmfates_interfaceMod.F90:: reading fates_fire_low_moisture_Slope clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture_Coeff clmfates_interfaceMod.F90:: reading fates_fire_mid_moisture_Slope clmfates_interfaceMod.F90:: reading fates_frag_maxdecomp clmfates_interfaceMod.F90:: reading fates_phen_leaf_habit clmfates_interfaceMod.F90:: reading fates_phen_stem_drop_fraction clmfates_interfaceMod.F90:: reading fates_phen_fnrt_drop_fraction clmfates_interfaceMod.F90:: reading fates_phen_mindaysoff clmfates_interfaceMod.F90:: reading fates_phen_drought_threshold clmfates_interfaceMod.F90:: reading fates_phen_moist_threshold clmfates_interfaceMod.F90:: reading fates_allom_fnrt_prof_a clmfates_interfaceMod.F90:: reading fates_allom_fnrt_prof_b clmfates_interfaceMod.F90:: reading fates_allom_fnrt_prof_mode clmfates_interfaceMod.F90:: reading fates_woody clmfates_interfaceMod.F90:: reading fates_wood_density clmfates_interfaceMod.F90:: reading fates_leaf_slamax clmfates_interfaceMod.F90:: reading fates_leaf_slatop clmfates_interfaceMod.F90:: reading fates_allom_sai_scaler clmfates_interfaceMod.F90:: reading fates_recruit_seed_dbh_repro_threshold clmfates_interfaceMod.F90:: reading fates_alloc_storage_cushion clmfates_interfaceMod.F90:: reading fates_alloc_store_priority_frac clmfates_interfaceMod.F90:: reading fates_turnover_senleaf_fdrought clmfates_interfaceMod.F90:: reading fates_turnover_fnrt clmfates_interfaceMod.F90:: reading fates_leafn_vert_scaler_coeff1 clmfates_interfaceMod.F90:: reading fates_leafn_vert_scaler_coeff2 clmfates_interfaceMod.F90:: reading fates_recruit_seed_alloc_mature clmfates_interfaceMod.F90:: reading fates_recruit_seed_alloc clmfates_interfaceMod.F90:: reading fates_trs_repro_alloc_a clmfates_interfaceMod.F90:: reading fates_trs_repro_alloc_b clmfates_interfaceMod.F90:: reading fates_c2b clmfates_interfaceMod.F90:: reading fates_allom_l2fr clmfates_interfaceMod.F90:: reading fates_cnp_pid_kd clmfates_interfaceMod.F90:: reading fates_cnp_pid_ki clmfates_interfaceMod.F90:: reading fates_cnp_pid_kp clmfates_interfaceMod.F90:: reading fates_cnp_store_ovrflw_frac clmfates_interfaceMod.F90:: reading fates_cnp_nfix1 clmfates_interfaceMod.F90:: reading fates_grperc clmfates_interfaceMod.F90:: reading fates_allom_dbh_maxheight clmfates_interfaceMod.F90:: reading fates_allom_hmode clmfates_interfaceMod.F90:: reading fates_allom_lmode clmfates_interfaceMod.F90:: reading fates_allom_fmode clmfates_interfaceMod.F90:: reading fates_allom_amode clmfates_interfaceMod.F90:: reading fates_allom_stmode clmfates_interfaceMod.F90:: reading fates_allom_cmode clmfates_interfaceMod.F90:: reading fates_allom_smode clmfates_interfaceMod.F90:: reading fates_allom_dmode clmfates_interfaceMod.F90:: reading fates_allom_la_per_sa_int clmfates_interfaceMod.F90:: reading fates_allom_la_per_sa_slp clmfates_interfaceMod.F90:: reading fates_allom_agb_frac clmfates_interfaceMod.F90:: reading fates_allom_d2h1 clmfates_interfaceMod.F90:: reading fates_allom_d2h2 clmfates_interfaceMod.F90:: reading fates_allom_d2h3 clmfates_interfaceMod.F90:: reading fates_allom_d2bl1 clmfates_interfaceMod.F90:: reading fates_allom_d2bl2 clmfates_interfaceMod.F90:: reading fates_allom_d2bl3 clmfates_interfaceMod.F90:: reading fates_allom_blca_expnt_diff clmfates_interfaceMod.F90:: reading fates_allom_d2ca_coefficient_max clmfates_interfaceMod.F90:: reading fates_allom_d2ca_coefficient_min clmfates_interfaceMod.F90:: reading fates_allom_agb1 clmfates_interfaceMod.F90:: reading fates_allom_agb2 clmfates_interfaceMod.F90:: reading fates_allom_agb3 clmfates_interfaceMod.F90:: reading fates_allom_agb4 clmfates_interfaceMod.F90:: reading fates_allom_h2cd1 clmfates_interfaceMod.F90:: reading fates_allom_h2cd2 clmfates_interfaceMod.F90:: reading fates_allom_zroot_max_dbh clmfates_interfaceMod.F90:: reading fates_allom_zroot_max_z clmfates_interfaceMod.F90:: reading fates_allom_zroot_min_dbh clmfates_interfaceMod.F90:: reading fates_allom_zroot_min_z clmfates_interfaceMod.F90:: reading fates_allom_zroot_k clmfates_interfaceMod.F90:: reading fates_turnover_branch clmfates_interfaceMod.F90:: reading fates_cnp_nitr_store_ratio clmfates_interfaceMod.F90:: reading fates_cnp_phos_store_ratio clmfates_interfaceMod.F90:: reading fates_stoich_nitr clmfates_interfaceMod.F90:: reading fates_stoich_phos clmfates_interfaceMod.F90:: reading fates_alloc_organ_priority clmfates_interfaceMod.F90:: reading fates_cnp_turnover_nitr_retrans clmfates_interfaceMod.F90:: reading fates_cnp_turnover_phos_retrans clmfates_interfaceMod.F90:: reading fates_turnover_leaf_canopy clmfates_interfaceMod.F90:: reading fates_turnover_leaf_ustory clmfates_interfaceMod.F90:: reading fates_alloc_organ_id clmfates_interfaceMod.F90:: reading fates_leaf_c3psn clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_btran_model clmfates_interfaceMod.F90:: reading fates_leaf_agross_btran_model clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_ballberry clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_slope_medlyn clmfates_interfaceMod.F90:: reading fates_leaf_stomatal_intercept clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_curvature clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_intercept clmfates_interfaceMod.F90:: reading fates_maintresp_reduction_upthresh clmfates_interfaceMod.F90:: reading fates_maintresp_leaf_atkin2017_baserate clmfates_interfaceMod.F90:: reading fates_maintresp_leaf_ryan1991_baserate clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxha clmfates_interfaceMod.F90:: reading fates_leaf_jmaxha clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxhd clmfates_interfaceMod.F90:: reading fates_leaf_jmaxhd clmfates_interfaceMod.F90:: reading fates_leaf_vcmaxse clmfates_interfaceMod.F90:: reading fates_leaf_jmaxse clmfates_interfaceMod.F90:: reading fates_leaf_fnps soil_layerstruct_predefined varpar 20SL_8.5m soil_layerstruct_userdefined varpar -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 nlevsoi, nlevgrnd varpar 20 25 CLM varpar subsurface discretization levels nlevsoi = 20 nlevgrnd = 25 nlevdecomp = 20 nlevdecomp_full = 25 nlevlak = 10 define run: source = Community Terrestrial Systems Model model_version = noresm3_0_beta12 run type = initial case title = i1850_noresm3_0_beta12.CRUJRA.fireemis_branch.2026-05-18 username = rosief hostname = olivia process control parameters: use_lch4 = T use_nitrif_denitrif = T use_nvmovement = F use_extralakelayers = F use_vichydro = F use_excess_ice = T use_cn = F use_cndv = F use_crop = F flush_gdd20 = F use_fertilizer = F use_grainproduct = F crop_residue_removal_frac = 0.000000000000000E+000 o3_veg_stress_method = unset use_snicar_frc = F snicar_use_aerosol = T use_vancouver = F use_mexicocity = F use_noio = F use_SSRE = F input data files: PFT physiology and parameters file = /cluster/work/projects/nn9560k/inputdata//lnd/clm2/paramdata/ctsm60_params.5.3. 045_noresm_v14_c251031.nc surface data = /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surf data_4x5_hist_1850_16pfts_c251022.nc hillslope_file, hillslope dataset not set fatmlndfrc not set, setting frac/mask to 1 Convert ocean to land = T Number of ACTIVE PFTS (0 means input pft data NOT collapsed to n_dom_pfts) = 0 Number of ACTIVE LANDUNITS (0 means input landunit data NOT collapsed to n_d om_landunits) = 0 Collapse urban landunits; done before collapsing all landunits to n_dom_land units; .false. means do nothing i.e. keep all the urban landunits, though n_dom _landunits may still remove them = F Threshold above which the model keeps the soil landunit = 0.000000000000000E+000 Threshold above which the model keeps the crop landunit = 0.000000000000000E+000 Threshold above which the model keeps the glacier landunit = 0.000000000000000E+000 Threshold above which the model keeps the lake landunit = 0.000000000000000E+000 Threshold above which the model keeps the wetland landunit = 0.000000000000000E+000 Threshold above which the model keeps the urban landunits = 0.000000000000000E+000 Supplemental Nitrogen mode is set to run over Patches: ALL nfix_timeconst, timescale for smoothing npp in N fixation term: 10.0000000000000 spinup_state, (0 = normal mode; 1 = AD spinup; 2 AAD) : 0 model is currently NOT in AD spinup mode. override_bgc_restart_mismatch_dump : F som_adv_flux, the advection term in soil mixing (m/s) : 0.000000000000000E+000 max_depth_cryoturb (m) : 3.00000000000000 surfprof_exp : 10.0000000000000 snow optical properties file = /cluster/work/projects/nn9560k/inputdata//lnd/clm2/snicardata/snicar_optics_5bnd_c013122.nc snow aging parameters file = /cluster/work/projects/nn9560k/inputdata//lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc SNICAR: downward solar radiation spectrum type =mid_latitude_winter SNICAR: dust optics type = sahara SNICAR: number of bands in snow albedo calculation = 5 SNICAR: snow grain shape type = hexagonal_plate SNICAR: BC-snow internal mixing = T SNICAR: dust-snow internal mixing = F SNICAR: OC in snow = F Number of snow layers = 12 Max snow depth (mm) = 0.1000000000D+05 glc number of elevation classes = 10 glc CLM glacier areas and topography will NOT evolve dynamically glc snow persistence max days = 0 initial data created by model (cold start) atmospheric forcing data is from cesm atm model Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd model physics parameters: CO2 volume mixing ratio (umol/mol) = 0.2847000000D+03 land-ice albedos (unitless 0-1) = 0.600000000000000 0.400000000000000 hillslope hydrology = F downscale hillslope meteorology = T hillslope routing = F hillslope_fsat_equals_zero = F pre-defined soil layer structure = 20SL_8.5m user-defined soil layer structure = -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 -9999999.00000000 user-defined number of soil layers = -9999999 plant hydraulic stress = F nsegspc = 35 perchroot (plant water stress based on unfrozen layers only) = F perchroot (plant water stress based on time-integrated active layer only) = F anoxia (applied to soil decomposition) = T Lake Model Namelists: Increased mixing relative to Hostetler wind-driven eddy expression will be used for deep lakes exceeding depth 25.0000000000000 by a factor of 10.0000000000000 . Albedo over melting lakes will approach values (visible, NIR): 0.100000000000000 0.100000000000000 as compared with 0.60, 0.40 for cold frozen lakes with no snow. plant nitrogen model namelists: use_flexibleCN = F use_luna = F ED/FATES: use_fates = T fates_spitfire_mode = 4 fates_harvest_mode = no_harvest fates_stomatal_model = medlyn2011 fates_stomatal_assimilation = net fates_leafresp_model = ryan1991 fates_cstarvation_model = linear fates_regeneration_model = default fates_radiation_model = twostream fates_hydro_solver = 2D_Picard fates_electron_transport_model = FvCB1980 fates_paramfile = /cluster/work/projects/nn9560k/inputdata//lnd/clm2/paramdata/fates_params_sci.1 .88.6_api.42.0.0_14pft_nor_sci2_api1_c260130.nc fates_parteh_mode = 1 fates_photosynth_acclimation = nonacclimating use_fates_planthydro = F use_fates_tree_damage = F use_fates_cohort_age_tracking = F use_fates_daylength_factor = T use_fates_ed_st3 = F use_fates_ed_prescribed_phys = F use_fates_inventory_init = F use_fates_fixed_biogeog = T use_fates_nocomp = T use_fates_sp = F use_fates_luh= F use_fates_lupft= F use_fates_potentialveg = F fluh_timeseries = flandusepftdat = fates_seeddisp_cadence = 0 fates_seeddisp_cadence: 0, 1, 2, 3 => off, daily, monthly, or yearly disper sal fates_inventory_ctrl_filename = use_fates_managed_fire= F dynamic_subgrid settings: &DYNAMIC_SUBGRID FLANDUSE_TIMESERIES = , DO_TRANSIENT_PFTS = F, DO_TRANSIENT_CROPS = F, DO_TRANSIENT_LAKES = F, DO_TRANSIENT_URBAN = F, DO_HARVEST = F, DO_GROSSUNREP = F, VARS_1DWT_W_TIME = F, RESET_DYNBAL_BASELINES = F, FOR_TESTING_ALLOW_NON_ANNUAL_CHANGES = F, FOR_TESTING_ZERO_DYNBAL_FLUXES = F / hillslope_properties settings: hillslope_pft_distribution_method = Standard hillslope_soil_profile_method = Uniform Input land mesh file /cluster/work/projects/nn9560k/inputdata//share/meshes/fv4x5_050615_polemod_ESMFmesh_cdf5.nc Input mask mesh file /cluster/work/projects/nn9560k/inputdata//share/meshes/gx3v7_120309_ESMFmesh.nc Obtaining land mask and fraction from mask file /cluster/work/projects/nn9560k/inputdata//share/meshes/gx3v7_120309_ESMFmesh.nc Attempting to read global dimensions from surface dataset (GETFIL): attempting to find local file surfdata_4x5_hist_1850_16pfts_c251022.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surfdata_4x5_hist_1850_16pfts_c251022.nc global ni,nj = 72 46 model grid is 2-dimensional Computing land fraction and land mask by mapping mask from mesh_mask file decomp precompute numg,nclumps,seglen1,avg_seglen,nsegspc= 1466 256 T 1.000000 5.726562 Surface Grid Characteristics longitude points = 72 latitude points = 46 total number of land gridcells = 1466 Decomposition Characteristics clumps per process = 1 Attempting to read GLACIER_REGION... (GETFIL): attempting to find local file surfdata_4x5_hist_1850_16pfts_c251022.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surfdata_4x5_hist_1850_16pfts_c251022.nc (OPNFIL): Successfully opened file lnd_in on unit= 99 clm_glacier_behavior settings: &CLM_GLACIER_BEHAVIOR GLACIER_REGION_BEHAVIOR = single_at_atm_topo UNSET virtual virtual UNSET UNSET UNSET UNSET UNSET UNSET UNSET , GLACIER_REGION_MELT_BEHAVIOR = remains_in_place UNSET replaced_by_ice replaced_by_ice UNSET UNSET UNSET UNSET UNSET UNSET UNSET , GLACIER_REGION_ICE_RUNOFF_BEHAVIOR = melted UNSET remains_ice remains_ice UNSET UNSET UNSET UNSET UNSET UNSET UNSET / Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_4x5_hist_1850_16pfts_c251022.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surfdata_4x5_hist_1850_16pfts_c251022.nc UrbanInput /cluster/work/projects/nn9560k/inputdata//lnd/clm2/surfdata_esmf/ctsm5.4.0/surf data_4x5_hist_1850_16pfts_c251022.nc Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file ctsm60_params.5.3.045_noresm_v14_c251031.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/paramdata/ctsm60_params.5.3.045_noresm_v14_c251031.nc clmfates_interfaceMod.F90::FatesReadPFTs :: CLM reading ED/FATES PFTs (GETFIL): attempting to find local file fates_params_sci.1.88.6_api.42.0.0_14pft_nor_sci2_api1_c260130.nc (GETFIL): using /cluster/work/projects/nn9560k/inputdata//lnd/clm2/paramdata/fates_params_sci.1.88.6_api.42.0.0_14pft_nor_sci2_api1_c260130.nc ncd_inqvid: variable fates_fire_emission_compound_name is not on dataset